Today was the first time I tried working with numpy arrays in Cython. I got a compilation error saying that the header file for numpy could not be found. Here I found an easy fix for this problem. The setup.py script can be changed to automatically detect and add the numpy include path:
from distutils.core import setup from distutils.extension import Extension from Cython.Distutils import build_ext import numpy ext_modules = [Extension("xx_cython",["xx_cython.pyx"],\ libraries=["m"],include_dirs=[numpy.get_include()])] setup( name= 'xx model class', cmdclass = {'build_ext': build_ext}, ext_modules = ext_modules )
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